Coleman Broaddus

Pfotenhauerstraße 108
01307 Dresden

[email protected]
[email protected]
twitter / github / scholar / resume

Working towards a PhD in bioimage informatics at the MPI-CBG as a part of the Myers Lab. Masters in nanobiophysics at the BIOTEC in Dresden in 2015 with a thesis supervised by Frank Jülicher. Bachelor in Physics from Carnegie Mellon.

Interests

cell detection • segmentation • tracking • image denoising • deep learning • self-supervised learning

Theses

• Masters thesis – Pattern formation in chemically reactive, phase-separating systems
• PhD thesis – Bioimage methods for tracking cells during development

Software

• detsegtra – common bioimage analysis routines – [github]

Publications

• Removing structured noise with self-supervised blind-spot networks [github] [pdf]
• Cell detection with star-convex polygons
• Content-aware image restoration: pushing the limits of fluorescence microscopy
• Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos